OCA Atlas for 5KS9

5KS9

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, A
D, B
E, G

Primary reference

Diverse T Cell Receptor Gene Usage in HLA-DQ8-Associated Celiac Disease Converges into a Consensus Binding Solution., Petersen J, Kooy-Winkelaar Y, Loh KL, Tran M, van Bergen J, Koning F, Rossjohn J, Reid HH, Structure. 2016 Aug 23. pii: S0969-2126(16)30221-0. doi:, 10.1016/j.str.2016.07.010. PMID:27568928

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (548 Kb) [Save to disk]

Biological Unit Coordinates (5ks9.pdb1.gz) 273 Kb

Biological Unit Coordinates (5ks9.pdb2.gz) 272 Kb

LPC: Ligand-Protein Contacts for 5KS9

CSU: Contacts of Structural Units for 5KS9

Structure Factors (1781 Kb)

Retrieve 5KS9 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5KS9 from S2C, [Save to disk]

Re-refined 5ks9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KS9 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ks9] [5ks9_A] [5ks9_B] [5ks9_C] [5ks9_D] [5ks9_E] [5ks9_F] [5ks9_G] [5ks9_H] [5ks9_I] [5ks9_J]

SWISS-PROT database:

Domains found in 5KS9: [IG_like] [IGc1] [IGv] [MHC_II_alpha] [MHC_II_beta ] by SMART

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