5KSN Oxidoreductase date Jul 08, 2016
title Crystal Structure Of The S324g Variant Of Catalase-Peroxidas Pseudomallei With Inh Bound
authors P.C.Loewen
compound source
Molecule: Catalase-Peroxidase
Chain: A, B
Synonym: Cp,Peroxidasecatalase
Ec: 1.11.1.21
Engineered: Yes
Mutation: Yes
 Organism_scientific: Burkholderia Pseudomallei (Strain 1710
Organism_taxid: 320372
Strain: 1710b
Gene: Katg, Burps1710b_3366
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Um262
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pks
symmetry Space Group: P 21 21 21
R_factor 0.142 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.434 115.277 174.118 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand CL, HEM, MPD, NA, NIZ, OXY, PO4 enzyme Oxidoreductase E.C.1.11.1.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • catalase activity
  • peroxidase activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (482 Kb) [Save to disk]
  • Biological Unit Coordinates (5ksn.pdb1.gz) 473 Kb
  • LPC: Ligand-Protein Contacts for 5KSN
  • CSU: Contacts of Structural Units for 5KSN
  • Structure Factors (11060 Kb)
  • Retrieve 5KSN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KSN from S2C, [Save to disk]
  • Re-refined 5ksn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KSN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KSN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ksn_A] [5ksn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KSN
  • Community annotation for 5KSN at PDBWiki (http://pdbwiki.org)

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