5KSO	Hydrolase	date	Jul 08, 2016
title	Hmiro1 C-Domain Gdp-Pi Complex P3121 Crystal Form
authors	J.L.Klosowiak, P.J.Focia, S.E.Rice, D.M.Freymann
compound		source
Molecule: Mitochondrial Rho Gtpase 1 Chain: A Fragment: C-Terminal Gtpase Domain (Unp Residues 411-592) Synonym: Hmiro-1,Rac-Gtp-Binding Protein-Like Protein,Ras H Gene Family Member T1; Ec: 3.6.5.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rhot1, Arht1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31 2 1	R_factor 0.175 R_Free 0.209
crystal cell	length a length b length c angle alpha angle beta angle gamma 65.510 65.510 82.520 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	GDP, PO4	enzyme	Hydrolase E.C.3.6.5 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural insights into Parkin substrate lysine targeting from minimal Miro substrates., Klosowiak JL, Park S, Smith KP, French ME, Focia PJ, Freymann DM, Rice SE, Sci Rep. 2016 Sep 8;6:33019. doi: 10.1038/srep33019. PMID:27605430

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (5kso.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 5KSO CSU: Contacts of Structural Units for 5KSO Structure Factors (212 Kb) Retrieve 5KSO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KSO from S2C, [Save to disk] Re-refined 5kso structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KSO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KSO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kso] [5kso_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KSO: [small_GTPase ] by SMART

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