5KT6 Transferase date Jul 11, 2016
title Teranry Complex Of Human Dna Polymerase Iota(1-445) Insertin Opposite Template G In The Presence Of Mg2+
authors J.Y.Choi, A.Patra, M.Yeom, Y.S.Lee, Q.Zhang, M.Egli, F.P.Guengeric
compound source
Molecule: Dna (5'-D(Ptpgpgpgpgptpcpcpt)-3')
Chain: T
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna (5'-D(Papgpgpapcpcpc)-3')
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Dna Polymerase Iota
Chain: A
Fragment: Unp Residues 1-445
Synonym: Eta2,Rad30 Homolog B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poli, Rad30b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.204 R_Free 0.244
length a length b length c angle alpha angle beta angle gamma
98.269 98.269 201.656 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.54 Å
ligand 0KX, MG enzyme Transferase E.C. BRENDA

Primary referenceKinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota., Choi JY, Patra A, Yeom M, Lee YS, Zhang Q, Egli M, Guengerich FP, J Biol Chem. 2016 Aug 23. pii: jbc.M116.748285. PMID:27555320
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (5kt6.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 5KT6
  • CSU: Contacts of Structural Units for 5KT6
  • Structure Factors (177 Kb)
  • Retrieve 5KT6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KT6 from S2C, [Save to disk]
  • Re-refined 5kt6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KT6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KT6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5kt6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kt6_P] [5kt6] [5kt6_T] [5kt6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KT6
  • Community annotation for 5KT6 at PDBWiki (http://pdbwiki.org)

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