5KW2 Fatty Acid Binding Protein Hydrolase date Jul 15, 2016
title The Extra-Helical Binding Site Of Gpr40 And The Structural B Allosteric Agonism And Incretin Stimulation
authors J.D.Ho, B.Chau, L.Rodgers, F.Lu, K.L.Wilbur, K.A.Otto, Y.Chen, M.So J.P.Riley, H.C.Yang, N.A.Reynolds, S.D.Kahl, A.P.Lewis, C.Grosh R.E.Madsen, K.Conners, J.P.Linswala, T.Gheyi, M.D.Saflor, M.R.Le J.Benach, K.A.Baker, C.Montrose-Rafizadeh, M.J.Genin, A.R.Mille C.Hamdouchi
compound source
Molecule: Free Fatty Acid Receptor 1,Lysozyme,Free Fatty Ac Receptor 1;
Chain: A
Synonym: G-Protein Coupled Receptor 40,G-Protein Coupled Re
Ec: 3.2.1.17
Engineered: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: Ffar1, Gpr40, E, T4tp126
Expression_system: Baculovirus Expression Vector Pfastbac1-
Expression_system_taxid: 274590
symmetry Space Group: C 1 2 1
R_factor 0.230 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
147.654 55.950 80.313 90.00 93.77 90.00
method X-Ray Diffractionresolution 2.76 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for GPR40 allosteric agonism and incretin stimulation., Ho JD, Chau B, Rodgers L, Lu F, Wilbur KL, Otto KA, Chen Y, Song M, Riley JP, Yang HC, Reynolds NA, Kahl SD, Lewis AP, Groshong C, Madsen RE, Conners K, Lineswala JP, Gheyi T, Saflor MD, Lee MR, Benach J, Baker KA, Montrose-Rafizadeh C, Genin MJ, Miller AR, Hamdouchi C, Nat Commun. 2018 Apr 25;9(1):1645. doi: 10.1038/s41467-017-01240-w. PMID:29695780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (70 Kb) [Save to disk]
  • Biological Unit Coordinates (5kw2.pdb1.gz) 65 Kb
  • CSU: Contacts of Structural Units for 5KW2
  • Structure Factors (119 Kb)
  • Retrieve 5KW2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KW2 from S2C, [Save to disk]
  • View 5KW2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KW2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5kw2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kw2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KW2
  • Community annotation for 5KW2 at PDBWiki (http://pdbwiki.org)

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