5KY6 Lyase date Jul 21, 2016
title Human Muscle Fructose-1,6-Bisphosphate Aldolase
authors J.Wisniewski, J.Barciszewski, M.Jaskolski, D.Rakus
compound source
Molecule: Fructose-Bisphosphate Aldolase A
Chain: A, B, C, D
Synonym: Lung Cancer Antigen Ny-Lu-1,Muscle-Type Aldolase
Ec: 4.1.2.13
Engineered: Yes
Other_details: Gaps In The Sequence Indicate Residues That Modelled Because Of Poor Electron Density
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Muscle
Gene: Aldoa, Alda
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_vector_type: Plasmid
Expression_system_vector: Petite
symmetry Space Group: P 1 21 1
R_factor 0.186 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.511 57.253 164.016 90.00 102.57 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand
enzyme Lyase E.C.4.1.2.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (615 Kb) [Save to disk]
  • Biological Unit Coordinates (5ky6.pdb1.gz) 608 Kb
  • CSU: Contacts of Structural Units for 5KY6
  • Structure Factors (974 Kb)
  • Retrieve 5KY6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KY6 from S2C, [Save to disk]
  • Re-refined 5ky6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KY6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KY6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ky6_B] [5ky6_D] [5ky6_C] [5ky6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KY6
  • Community annotation for 5KY6 at PDBWiki (http://pdbwiki.org)

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