5KYN Protein Transport date Jul 21, 2016
title Structure Of Sec23 And Tango1 Complex
authors W.Ma, J.Goldberg
compound source
Molecule: Protein Transport Protein Sec23a
Chain: A, B
Synonym: Sec23-Related Protein A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sec23a
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Melanoma Inhibitory Activity Protein 3
Chain: C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.200 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.454 65.880 229.871 90.00 97.39 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • GTPase activator activity


  • Primary referenceTANGO1/cTAGE5 receptor as a polyvalent template for assembly of large COPII coats., Ma W, Goldberg J, Proc Natl Acad Sci U S A. 2016 Sep 6;113(36):10061-6. doi:, 10.1073/pnas.1605916113. Epub 2016 Aug 22. PMID:27551091
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (494 Kb) [Save to disk]
  • Biological Unit Coordinates (5kyn.pdb1.gz) 245 Kb
  • Biological Unit Coordinates (5kyn.pdb2.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 5KYN
  • CSU: Contacts of Structural Units for 5KYN
  • Structure Factors (944 Kb)
  • Retrieve 5KYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KYN from S2C, [Save to disk]
  • Re-refined 5kyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KYN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kyn_C] [5kyn] [5kyn_A] [5kyn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KYN
  • Community annotation for 5KYN at PDBWiki (http://pdbwiki.org)

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