5KYX Protein Transport date Jul 22, 2016
title Crystal Structure Of Sec23 And Tango1 Peptide1 Complex
authors W.Ma, J.Goldberg
compound source
Molecule: Protein Transport Protein Sec23a
Chain: A
Synonym: Sec23-Related Protein A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sec23a
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Protein Transport Protein Sec24d
Chain: B
Fragment: Unp Residues 266-1032
Synonym: Sec24-Related Protein D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sec24d, Kiaa0755
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.956 141.871 152.434 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.52 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • GTPase activator activity


    • B


    Primary referenceTANGO1/cTAGE5 receptor as a polyvalent template for assembly of large COPII coats., Ma W, Goldberg J, Proc Natl Acad Sci U S A. 2016 Sep 6;113(36):10061-6. doi:, 10.1073/pnas.1605916113. Epub 2016 Aug 22. PMID:27551091
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk]
  • Biological Unit Coordinates (5kyx.pdb1.gz) 500 Kb
  • LPC: Ligand-Protein Contacts for 5KYX
  • CSU: Contacts of Structural Units for 5KYX
  • Structure Factors (392 Kb)
  • Retrieve 5KYX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KYX from S2C, [Save to disk]
  • Re-refined 5kyx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KYX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KYX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kyx_B] [5kyx] [5kyx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KYX
  • Community annotation for 5KYX at PDBWiki (http://pdbwiki.org)

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