5KZI Transferase Transferase Inhibitor date Jul 25, 2016
title Crystal Structure Of Human Pim-1 Kinase In Complex With An Imidazopyridazine Inhibitor.
authors C.Mohr
compound source
Molecule: Serinethreonine-Protein Kinase Pim-1
Chain: A
Fragment: Unp Residues 33-305
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pim1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.178 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.998 95.998 81.251 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand 6YN enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of imidazopyridazines as potent Pim-1/2 kinase inhibitors., Wurz RP, Sastri C, D'Amico DC, Herberich B, Jackson CL, Pettus LH, Tasker AS, Wu B, Guerrero N, Lipford JR, Winston JT, Yang Y, Wang P, Nguyen Y, Andrews KL, Huang X, Lee MR, Mohr C, Zhang JD, Reid DL, Xu Y, Zhou Y, Wang HL, Bioorg Med Chem Lett. 2016 Oct 1. pii: S0960-894X(16)31016-2. doi:, 10.1016/j.bmcl.2016.09.067. PMID:27769621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5kzi.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 5KZI
  • CSU: Contacts of Structural Units for 5KZI
  • Structure Factors (519 Kb)
  • Retrieve 5KZI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KZI from S2C, [Save to disk]
  • Re-refined 5kzi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KZI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KZI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kzi] [5kzi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KZI: [S_TKc ] by SMART
  • Other resources with information on 5KZI
  • Community annotation for 5KZI at PDBWiki (http://pdbwiki.org)

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