5KZQ Signaling Protein date Jul 25, 2016
title Metabotropic Glutamate Receptor In Complex With Antagonist ( 2~{R},3~{S},4~{S},5~{R},6~{R})-2-Azanyl-3-[[3,4-Bis(Fluoran Phenyl]Sulfanylmethyl]-4-Oxidanyl-Bicyclo[3.1.0]Hexane-2,6- Dicarboxylic Acid
authors M.D.Chappell, R.Li, S.C.Smith, B.A.Dressman, E.G.Tromiczak, A.E.T J.Blanco, T.Vetman, S.J.Quimby, J.Matt, T.Britton, A.M.Fivush, J.M.Schkeryantz, D.Mayhugh, J.A.Erickson, M.Bures, C.Jaramillo, M.Carpintero, J.E.De Diego, M.Barberis, S.Garcia-Cerrada, J.F.S S.Antonysamy, S.Atwell, I.Macewan, B.Condon, C.Bradley, J.Wang, A K.Conners, C.Groshong, S.R.Wasserman, J.W.Koss, J.M.Witkin, X.Li C.Overshiner, K.A.Wafford, W.Seidel, X.S.Wang, B.A.Heinz, S.Swa J.Catlow, D.Bedwell, J.A.Monn, C.H.Mitch, P.Ornstein
compound source
Molecule: Metabotropic Glutamate Receptor 2
Chain: A
Synonym: Mglur2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Grm2, Gprc1b, Mglur2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 41 21 2
R_factor 0.208 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
166.297 166.297 79.776 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 6YS, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of (1S,2R,3S,4S,5R,6R)-2-Amino-3-[(3,4-difluorophenyl)sulfanylmethyl]-4-hydroxy-bicy clo[3.1.0]hexane-2,6-dicarboxylic Acid Hydrochloride (LY3020371.HCl): A Potent, Metabotropic Glutamate 2/3 Receptor Antagonist with Antidepressant-Like Activity., Chappell MD, Li R, Smith SC, Dressman BA, Tromiczak EG, Tripp AE, Blanco MJ, Vetman T, Quimby SJ, Matt J, Britton TC, Fivush AM, Schkeryantz JM, Mayhugh D, Erickson JA, Bures MG, Jaramillo C, Carpintero M, Diego JE, Barberis M, Garcia-Cerrada S, Soriano JF, Antonysamy S, Atwell S, MacEwan I, Condon B, Sougias C, Wang J, Zhang A, Conners K, Groshong C, Wasserman SR, Koss JW, Witkin JM, Li X, Overshiner C, Wafford KA, Seidel W, Wang XS, Heinz BA, Swanson S, Catlow JT, Bedwell DW, Monn JA, Mitch CH, Ornstein PL, J Med Chem. 2016 Dec 22;59(24):10974-10993. Epub 2016 Dec 6. PMID:28002967
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (5kzq.pdb1.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 5KZQ
  • CSU: Contacts of Structural Units for 5KZQ
  • Structure Factors (328 Kb)
  • Retrieve 5KZQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KZQ from S2C, [Save to disk]
  • Re-refined 5kzq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KZQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KZQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kzq_A] [5kzq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KZQ
  • Community annotation for 5KZQ at PDBWiki (http://pdbwiki.org)

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