5L0Q Hydrolase Immune System date Jul 28, 2016
title Crystal Structure Of The Complex Between Adam10 D+C Domain A Conformation Specific Mab 8c7.
authors K.Xu, N.Saha, D.B.Nikolov
compound source
Molecule: Disintegrin And Metalloproteinase Domain-Containi 10;
Chain: A, D
Fragment: Unp Residues 455-646
Synonym: Adam 10,Kuzbanian Protein Homolog,Mammalian Disint Metalloprotease,Myelin-Associated Metalloproteinase;
Ec: 3.4.24.81
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Gene: Adam10, Madm
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Mab 8c7 Light Chain
Chain: B, E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Mab 8c7 Heavy Chain
Chain: C, F
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.326 141.679 268.080 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.76 Å
ligand MG, NAG, SO4 enzyme Hydrolase E.C.3.4.24.81 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk]
  • Biological Unit Coordinates (5l0q.pdb1.gz) 199 Kb
  • LPC: Ligand-Protein Contacts for 5L0Q
  • CSU: Contacts of Structural Units for 5L0Q
  • Structure Factors (3427 Kb)
  • Retrieve 5L0Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L0Q from S2C, [Save to disk]
  • Re-refined 5l0q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L0Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L0Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l0q_D] [5l0q_F] [5l0q] [5l0q_A] [5l0q_B] [5l0q_E] [5l0q_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5L0Q: [DISIN] [IG_like] [IGv ] by SMART
  • Other resources with information on 5L0Q
  • Community annotation for 5L0Q at PDBWiki (http://pdbwiki.org)

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