5L0R Transferase date Jul 28, 2016
title Human Poglut1 In Complex With Notch1 Egf12 And Udp
authors Z.Li, J.M.Rini
compound source
Molecule: Protein O-Glucosyltransferase 1
Chain: A
Synonym: Cap10-Like 46 Kda Protein,Hclp46,Ktel Motif-Contai Protein 1,Myelodysplastic Syndromes Relative Protein,O- Glucosyltransferase Rumi Homolog,Hrumi,Protein O-Xylosyltra
Ec: 2.4.1.-,2.4.2.26
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Poglut1, C3orf9, Clp46, Ktelc1, Mdsrp, Mds010, Unq490
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_strain: Hek293s Gnti-
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pb-T-Paf

Molecule: Neurogenic Locus Notch Homolog Protein 1
Chain: B
Synonym: Hn1,Translocation-Associated Notch Protein Tan-1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Notch1, Tan1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pmal
symmetry Space Group: P 21 21 21
R_factor 0.149 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
70.580 73.560 83.280 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Transferase E.C.2.4.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural basis of Notch O-glucosylation and O-xylosylation by mammalian protein-O-glucosyltransferase 1 (POGLUT1)., Li Z, Fischer M, Satkunarajah M, Zhou D, Withers SG, Rini JM, Nat Commun. 2017 Aug 4;8(1):185. doi: 10.1038/s41467-017-00255-7. PMID:28775322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (217 Kb) [Save to disk]
  • Biological Unit Coordinates (5l0r.pdb1.gz) 208 Kb
  • CSU: Contacts of Structural Units for 5L0R
  • Structure Factors (1363 Kb)
  • Retrieve 5L0R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L0R from S2C, [Save to disk]
  • View 5L0R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L0R
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l0r from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l0r_B] [5l0r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L0R
  • Community annotation for 5L0R at PDBWiki (http://pdbwiki.org)

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