5L11 Transcription Inhibitor date Jul 28, 2016
title Human Liver Receptor Homologue-1 (Lrh-1) Bound To Rjw100 And Fragment Of Tif-2
authors S.G.Mays, E.A.Ortlund
compound source
Molecule: Nuclear Receptor Subfamily 5 Group A Member 2
Chain: A
Fragment: Unp Residues 299-541
Synonym: Alpha-1-Fetoprotein Transcription Factor,B1-Bindin Hb1f,Cyp7a Promoter-Binding Factor,Hepatocytic Transcriptio Liver Receptor Homolog 1,Lrh-1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr5a2, B1f, Cpf, Ftf
Expression_system: Enterobacteria Phage L1
Expression_system_taxid: 268588

Molecule: Tif2
Chain: C
Fragment: Unp Residues 740-753
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.198 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.418 46.418 220.259 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand RJW enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structures of the Nuclear Receptor, Liver Receptor Homolog 1, Bound to Synthetic Agonists Reveal a Novel Mechanism of Activation., Mays SG, Okafor CD, Whitby RJ, Goswami D, Stec JO, Flynn AR, Dugan MC, Jui NT, Griffin PR, Ortlund EA, J Biol Chem. 2016 Sep 30. pii: jbc.M116.753541. PMID:27694446
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (5l11.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 5L11
  • CSU: Contacts of Structural Units for 5L11
  • Structure Factors (157 Kb)
  • Retrieve 5L11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L11 from S2C, [Save to disk]
  • Re-refined 5l11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L11
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l11_A] [5l11] [5l11_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5L11: [HOLI ] by SMART
  • Other resources with information on 5L11
  • Community annotation for 5L11 at PDBWiki (http://pdbwiki.org)

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