5L2W Transferase Cell Cycle Inhibitor date Aug 02, 2016
title The X-Ray Co-Crystal Structure Of Human Cdk2cycline And Din
authors P.Chen, R.A.Ferre, W.Deihl, X.Yu, Y.A.He
compound source
Molecule: Cyclin-Dependent Kinase 2
Chain: A
Synonym: Cell Division Protein Kinase 2,P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2, Cdkn2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: G1s-Specific Cyclin-E1
Chain: B
Fragment: Unp Residues 81-363
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccne1, Ccne
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.200 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.307 100.307 151.857 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand 1QK, GOL, TPO enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceSpectrum and Degree of CDK Drug Interactions Predicts Clinical Performance., Chen P, Lee N, Hu W, Xu M, Ferre RA, Lam H, Bergqvist S, Solowiej J, Diehl W, He YA, Yu X, Nagata A, VanArsdale T, Murray BW, Mol Cancer Ther. 2016 Aug 5. pii: molcanther.0300.2016. PMID:27496135
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (5l2w.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 5L2W
  • CSU: Contacts of Structural Units for 5L2W
  • Structure Factors (555 Kb)
  • Retrieve 5L2W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L2W from S2C, [Save to disk]
  • Re-refined 5l2w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L2W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L2W
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l2w from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l2w] [5l2w_A] [5l2w_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5L2W: [CYCLIN] [Cyclin_C] [S_TKc ] by SMART
  • Other resources with information on 5L2W
  • Community annotation for 5L2W at PDBWiki (http://pdbwiki.org)

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