5L46 Oxidoreductase date May 25, 2016
title Crystal Structure Of Human Dimethylglycine-Dehydrogenase
authors A.Hromic, T.Pavkov-Keller, K.Gruber
compound source
Molecule: Dimethylglycine Dehydrogenase, Mitochondrial
Chain: A, B
Synonym: Me2glydh
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dmgdh
Expression_system: Komagataella Phaffii
Expression_system_taxid: 460519
Expression_system_strain: Km71h
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppick-Pdi
symmetry Space Group: P 1 21 1
R_factor 0.179 R_Free 0.269
length a length b length c angle alpha angle beta angle gamma
83.377 119.868 86.466 90.00 92.58 90.00
method X-Ray Diffractionresolution 3.09 Å
ligand FAD enzyme Oxidoreductase E.C. BRENDA
A, B
  • electron transfer activity

  • Primary referenceStructure and biochemical properties of recombinant human dimethylglycine dehydrogenase and comparison to the disease-related H109R variant., Augustin P, Hromic A, Pavkov-Keller T, Gruber K, Macheroux P, FEBS J. 2016 Aug 3. doi: 10.1111/febs.13828. PMID:27486859
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (5l46.pdb1.gz) 121 Kb
  • Biological Unit Coordinates (5l46.pdb2.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 5L46
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  • Structure Factors (518 Kb)
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  • Dipole moment, from Dipole Server at Weizmann Institute
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  • Fold representative 5l46 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l46] [5l46_B] [5l46_A]
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