5L4Q Transferase date May 26, 2016
title Crystal Structure Of Adaptor Protein 2 Associated Kinase 1 ( Complex With Lkb1 (Aak1 Dual Inhibitor)
authors F.J.Sorrell, E.Williams, N.Fox, K.R.Abdul Azeez, O.Gileadi, F.Von A.M.Edwards, C.Bountra, J.M.Elkins, S.Knapp
compound source
Molecule: Ap2-Associated Protein Kinase 1
Chain: A, B
Synonym: Adaptor-Associated Kinase 1
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aak1, Kiaa1048
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.800 55.050 86.570 90.00 104.44 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand EDO, LKB enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (292 Kb) [Save to disk]
  • Biological Unit Coordinates (5l4q.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (5l4q.pdb2.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 5L4Q
  • CSU: Contacts of Structural Units for 5L4Q
  • Structure Factors (2451 Kb)
  • Retrieve 5L4Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L4Q from S2C, [Save to disk]
  • Re-refined 5l4q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L4Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L4Q
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l4q from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l4q_B] [5l4q_A] [5l4q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5L4Q: [STYKc ] by SMART
  • Other resources with information on 5L4Q
  • Community annotation for 5L4Q at PDBWiki (http://pdbwiki.org)

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