5L5F | Hydrolase Hydrolase Inhibitor | date | May 28, 2016 |
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title | Yeast 20s Proteasome With Human Beta5i (1-138) And Human Bet 111; 118-133) In Complex With Bortezomib | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
authors | M.Groll, E.M.Huber | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Alpha Type-2 Chain: A, O Synonym: Macropain Subunit Y7,Multicatalytic Endopeptidase Subunit Y7,Proteasome Component Y7,Proteinase Ysce Subunit Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre8, Prs4, Yml092c Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Alpha Type-3 Chain: B, P Synonym: Macropain Subunit Y13,Multicatalytic Endopeptidase Subunit Y13,Proteasome Component Y13,Proteinase Ysce Subuni Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre9, Prs5, Ygr135w Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Alpha Type-4 Chain: C, Q Synonym: Macropain Subunit Pre6,Multicatalytic Endopeptidas Subunit Pre6,Proteasome Component Pre6,Proteinase Ysce Subu Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre6, Yol038w Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Alpha Type-5 Chain: D, R Synonym: Macropain Subunit Pup2,Multicatalytic Endopeptidas Subunit Pup2,Proteasome Component Pup2,Proteinase Ysce Subu Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pup2, Doa5, Ygr253c, G9155 Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Alpha Type-6 Chain: E, S Synonym: Macropain Subunit Pre5,Multicatalytic Endopeptidas Subunit Pre5,Proteasome Component Pre5,Proteinase Ysce Subu Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre5, Ymr314w, Ym9924.06 Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Probable Proteasome Subunit Alpha Type-7 Chain: F, T Synonym: Macropain Subunit C1,Multicatalytic Endopeptidase Subunit C1,Proteasome Component C1,Proteinase Ysce Subunit Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre10, Prc1, Prs1, Yor362c, O6650 Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Alpha Type-1 Chain: G, U Synonym: Macropain Subunit C7-Alpha,Multicatalytic Endopept Complex C7,Proteasome Component C7-Alpha,Proteasome Compone Proteinase Ysce Subunit 7,Scl1 Suppressor Protein; Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Scl1, Prc2, Prs2, Ygl011c Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Beta Type-2 Chain: H, V Synonym: Macropain Subunit Pup1,Multicatalytic Endopeptidas Subunit Pup1,Proteasome Component Pup1,Proteinase Ysce Subu Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pup1, Yor157c Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Beta Type-3 Chain: I, W Synonym: Macropain Subunit Pup3,Multicatalytic Endopeptidas Subunit Pup3,Proteasome Component Pup3; Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pup3, Yer094c Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Beta Type-4 Chain: J, X Synonym: Macropain Subunit C11,Multicatalytic Endopeptidase Subunit C11,Proteasome Component C11,Proteinase Ysce Subuni Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre1, Yer012w Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Beta Type-8,Proteasome Subunit Type-5; Chain: K, Y Synonym: Low Molecular Mass Protein 7,Macropain Subunit C13 Multicatalytic Endopeptidase Complex Subunit C13,Proteasome C13,Proteasome Subunit Beta-5i,Really Interesting New Gene Protein,Macropain Subunit Pre2,Multicatalytic Endopeptidase Subunit Pre2,Proteasome Component Pre2,Proteinase Ysce Subu Ec: 3.4.25.1,3.4.25.1 Engineered: Yes |
Organism_scientific: Homo Sapiens, Saccharomyces Cerevisiae Atcc 204508 S288c); Organism_common: Human, Baker'S Yeast Organism_taxid: 9606, 559292 Gene: Psmb8, Lmp7, Psmb5i, Ring10, Y2, Pre2, Doa3, Prg1, Yp P8283.10; Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Beta Type-6,Proteasome Subunit Type-1,Proteasome Subunit Beta Type-6,Proteasome Subunit Be Proteasome Subunit Beta Type-6; Chain: L, Z Synonym: Multicatalytic Endopeptidase Complex Subunit C5,Pr Component C5,Macropain Subunit C5,Multicatalytic Endopeptid Complex Subunit C5,Proteasome Component C5,Proteasome Gamma Multicatalytic Endopeptidase Complex Subunit C5,Proteasome C5,Macropain Subunit C5,Multicatalytic Endopeptidase Comple C5,Proteasome Component C5,Proteasome Gamma Chain,Multicata Endopeptidase Complex Subunit C5,Proteasome Component C5; Ec: 3.4.25.1,3.4.25.1,3.4.25.1,3.4.25.1,3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c), Homo Sapiens, Saccharomyces Cerevisiae; Organism_common: Baker'S Yeast, Human Organism_taxid: 559292, 9606 Gene: Pre7, Prs3, Pts1, Ybl041w, Ybl0407, Psmb1, Psc5 Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Beta Type-7 Chain: M, a Synonym: Macropain Subunit Pre4,Multicatalytic Endopeptidas Subunit Pre4,Proteasome Component Pre4,Proteinase Ysce Subu Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre4, Yfr050c Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Proteasome Subunit Beta Type-1 Chain: N, b Synonym: Macropain Subunit Pre3,Multicatalytic Endopeptidas Subunit Pre3,Proteasome Component Pre3,Proteinase Ysce Subu Ec: 3.4.25.1 Engineered: Yes |
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c); Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Pre3, Yjl001w, J1407 Expression_system: Saccharomyces Cerevisiae S288c Expression_system_common: Baker'S Yeast Expression_system_taxid: 559292 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
symmetry | Space Group: P 1 21 1 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 2.50 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ligand | BO2, CL, MG | enzyme | Hydrolase E.C.3.4.25.1 BRENDA | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology |
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Primary reference | A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta5i., Huber EM, Heinemeyer W, de Bruin G, Overkleeft HS, Groll M, EMBO J. 2016 Dec 1;35(23):2602-2613. Epub 2016 Oct 27. PMID:27789522 |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |