5L7A Dna Binding Protein date Jun 02, 2016
title The Crystal Structure Of The Human Snf5ini1 Domain
authors M.D.Allen, G.Zinzalla, M.Bycroft
compound source
Molecule: Swisnf-Related Matrix-Associated Actin-Dependent Of Chromatin Subfamily B Member 1;
Chain: A, B, C, D
Synonym: Brg1-Associated Factor 47,Baf47,Integrase Interact Protein,Snf5 Homolog,Hsnf5;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Smarcb1, Baf47, Ini1, Snf5l1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C41
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.619 73.653 46.460 90.00 106.60 90.00
method X-Ray Diffractionresolution 2.10 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe structure of INI1/hSNF5 RPT1 and its interactions with the c-MYC:MAX heterodimer provide insights into the interplay between MYC and the SWI/SNF chromatin remodeling complex., Sammak S, Allen MD, Hamdani N, Bycroft M, Zinzalla G, FEBS J. 2018 Sep 17. doi: 10.1111/febs.14660. PMID:30222246
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (5l7a.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (5l7a.pdb2.gz) 12 Kb
  • Biological Unit Coordinates (5l7a.pdb3.gz) 12 Kb
  • Biological Unit Coordinates (5l7a.pdb4.gz) 12 Kb
  • CSU: Contacts of Structural Units for 5L7A
  • Structure Factors (948 Kb)
  • Retrieve 5L7A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L7A from S2C, [Save to disk]
  • Re-refined 5l7a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L7A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L7A
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5l7a from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l7a] [5l7a_C] [5l7a_A] [5l7a_B] [5l7a_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L7A
  • Community annotation for 5L7A at PDBWiki (http://pdbwiki.org)

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