5L9D date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand K, NAG, PE8, PEG, PG4, PGE enzyme
Primary referenceThe N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling., Naschberger A, Furnrohr BG, Lenac Rovis T, Malic S, Scheffzek K, Dieplinger H, Rupp B, Acta Crystallogr D Struct Biol. 2016 Dec 1;72(Pt 12):1267-1280. Epub 2016 Nov 29. PMID:27917827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (146 Kb) [Save to disk]
  • Biological Unit Coordinates (5l9d.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 5L9D
  • CSU: Contacts of Structural Units for 5L9D
  • Structure Factors (722 Kb)
  • Retrieve 5L9D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L9D from S2C, [Save to disk]
  • Re-refined 5l9d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5L9D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l9d] [5l9d_H] [5l9d_L]
  • SWISS-PROT database:
  • Domains found in 5L9D: [IG_like] [IGv ] by SMART

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