5L9U | Signaling Protein | date | Jun 11, 2016 |
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title | Model Of Human Anaphase-Promoting Complexcyclosome (Apcc-C A Cross Linked Ubiquitin Variant-Substrate-Ube2c (Ubch10) C Representing Key Features Of Multiubiquitination | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
authors | N.G.Brown, R.Vanderlinden, P.Dube, D.Haselbach, J.M.Peters, H.Sta B.A.Schulman | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
compound | source | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 1 Chain: A Synonym: Apc1,Cyclosome Subunit 1,Mitotic Checkpoint Regula Testis-Specific Gene 24 Protein; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc1, Tsg24 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 11 Chain: B Synonym: Apc11,Cyclosome Subunit 11,Hepatocellular Carcinom Associated Ring Finger Protein; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc11, Hspc214 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Cell Division Cycle Protein 23 Homolog Chain: C, P Synonym: Anaphase-Promoting Complex Subunit 8,Apc8,Cyclosom 8; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdc23, Anapc8 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 15 Chain: D Synonym: Apc15 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc15, C11orf51, Hspc020 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 16 Chain: E Synonym: Apc16,Cyclosome Subunit 16 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc16, C10orf104, Cenp-27 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Cell Division Cycle Protein 27 Homolog Chain: F, H Synonym: Anaphase-Promoting Complex Subunit 3,Apc3,Cdc27 Ho Cdc27hs,H-Nuc; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdc27, Anapc3, D0s1430e, D17s978e Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit Cdc26 Chain: G, W Synonym: Anaphase-Promoting Complex Subunit 12,Apc12,Cell D Cycle Protein 26 Homolog; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdc26, Anapc12, C9orf17 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 4 Chain: I Synonym: Apc4,Cyclosome Subunit 4 Engineered: Yes Other_details: Construct Contains The Remnant Of Prescissio Site At C-Terminus.; |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc4, Apc4 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Cell Division Cycle Protein 16 Homolog Chain: J, K Synonym: Anaphase-Promoting Complex Subunit 6,Apc6,Cdc16 Ho Cdc16hs,Cyclosome Subunit 6; Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdc16, Anapc6 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 10 Chain: L Synonym: Apc10,Cyclosome Subunit 10 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc10, Apc10 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 13 Chain: M Synonym: Apc13,Cyclosome Subunit 13 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc13 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 2 Chain: N Synonym: Apc2,Cyclosome Subunit 2 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc2, Apc2, Kiaa1406 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 5 Chain: O Synonym: Apc5,Cyclosome Subunit 5 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc5, Apc5 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Fizzy-Related Protein Homolog Chain: R Synonym: Fzr,Cdc20-Like Protein 1,Cdh1hct1 Homolog,Hcdh1 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fzr1, Cdh1, Fyr, Fzr, Kiaa1242 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Hsl1(Substrate)_peptide-Ubiquitin_variant Fusion Chain: S Ec: 2.7.11.1 Engineered: Yes Mutation: Yes Other_details: This Construct Comprises 768-842 Of Hsl1 Wit Terminal Gemini-Im Motif And Linker And A C-Terminal Ub Var (Chain V). K788c Of This Construct Is Cross-Linked To Ube2c (Chain U) And To Ubg75c (Not Visible) Via Tmea.; |
Organism_scientific: Saccharomyces Cerevisiae, Rattus Norve Organism_common: Baker'S Yeast, Norway Rat Organism_taxid: 4932, 10116 Gene: Hsl1, Ykl101w, Ykl453 Expression_system: Escherichia Coli Expression_system_taxid: 562 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Ubiquitin-Conjugating Enzyme E2 C Chain: U Synonym: (E3-Independent) E2 Ubiquitin-Conjugating Enzyme C Ubiquitin-Conjugating Enzyme C,Ubch10,Ubiquitin Carrier Pro Ubiquitin-Protein Ligase C; Ec: 2.3.2.23,2.3.2.24 Engineered: Yes Mutation: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ube2c, Ubch10 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecule: Anaphase-Promoting Complex Subunit 7 Chain: X, Y Synonym: Apc7,Cyclosome Subunit 7 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Anapc7, Apc7 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
symmetry | Space Group: P 1 |
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crystal cell |
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method | Electron Microscopy | resolution | 6.40 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
ligand | enzyme | Transferase E.C.2.7.11.1 BRENDA | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology |
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Primary reference | Dual RING E3 Architectures Regulate Multiubiquitination and Ubiquitin Chain Elongation by APC/C., Brown NG, VanderLinden R, Watson ER, Weissmann F, Ordureau A, Wu KP, Zhang W, Yu S, Mercredi PY, Harrison JS, Davidson IF, Qiao R, Lu Y, Dube P, Brunner MR, Grace CR, Miller DJ, Haselbach D, Jarvis MA, Yamaguchi M, Yanishevski D, Petzold G, Sidhu SS, Kuhlman B, Kirschner MW, Harper JW, Peters JM, Stark H, Schulman BA, Cell. 2016 Jun 2;165(6):1440-53. doi: 10.1016/j.cell.2016.05.037. PMID:27259151 |
Data retrieval |
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Visual 3D analysis of 5L9U |
Structure-derived information |
Sequence-derived information |
Other resources with information on 5L9U |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |