5LBZ Oxidoreductase date Jun 17, 2016
title Structure Of The Human Quinone Reductase 2 (Nqo2) In Complex Pacritinib
authors S.Schneider, G.Medard, B.Kuster
compound source
Molecule: Ribosyldihydronicotinamide Dehydrogenase [Quinone
Chain: A, B
Synonym: Nrh Dehydrogenase [Quinone] 2,Nrh:Quinone Oxidored Quinone Reductase 2,Qr2;
Ec: 1.10.5.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nqo2, Nmor2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.109 R_Free 0.131
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.454 79.220 106.230 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand 6T3, FAD, SO4, ZN enzyme Oxidoreductase E.C.1.10.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceThe target landscape of clinical kinase drugs., Klaeger S, Heinzlmeir S, Wilhelm M, Polzer H, Vick B, Koenig PA, Reinecke M, Ruprecht B, Petzoldt S, Meng C, Zecha J, Reiter K, Qiao H, Helm D, Koch H, Schoof M, Canevari G, Casale E, Depaolini SR, Feuchtinger A, Wu Z, Schmidt T, Rueckert L, Becker W, Huenges J, Garz AK, Gohlke BO, Zolg DP, Kayser G, Vooder T, Preissner R, Hahne H, Tonisson N, Kramer K, Gotze K, Bassermann F, Schlegl J, Ehrlich HC, Aiche S, Walch A, Greif PA, Schneider S, Felder ER, Ruland J, Medard G, Jeremias I, Spiekermann K, Kuster B, Science. 2017 Dec 1;358(6367). pii: 358/6367/eaan4368. doi:, 10.1126/science.aan4368. PMID:29191878
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (177 Kb) [Save to disk]
  • Biological Unit Coordinates (5lbz.pdb1.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 5LBZ
  • CSU: Contacts of Structural Units for 5LBZ
  • Structure Factors (872 Kb)
  • Retrieve 5LBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LBZ from S2C, [Save to disk]
  • View 5LBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LBZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lbz_B] [5lbz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LBZ
  • Community annotation for 5LBZ at PDBWiki (http://pdbwiki.org)

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