5LCL	Dna Binding Protein	date	Jun 22, 2016
title	Structure Of The Rad14 Dna-Binding Domain In Complex With C8 Aminofluorene- Guanine Containing Dna
authors	S.Schneider, T.Carell, C.Ebert, N.Simon
compound		source
Molecule: Dna Repair Protein Rad14 Chain: A Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Rad14, Ymr201c, Ym8325.02c Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Piba35
Molecule: Dna Repair Protein Rad14 Chain: B Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae S288c Organism_common: Baker'S Yeast Organism_taxid: 559292 Gene: Rad14, Ymr201c, Ym8325.02c Expression_system: Escherichia Coli Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Piba35
Molecule: Gctctac(8af)Tcatca Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Organism_taxid: 4930
Molecule: Dna (5'-D(Gptpgpaptpgpapcpgptpapgpap Chain: D Engineered: Yes		Synthetic: Yes Organism_scientific: Saccharomyces Organism_taxid: 4930
symmetry	Space Group: P 41	R_factor 0.217 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.205 53.205 130.965 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	8AF, ZN	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural insights into the recognition of N(2)-aryl- and C8-aryl DNA lesions by the repair protein XPA/Rad14., Ebert C, Simon N, Schneider S, Carell T, Chembiochem. 2017 Apr 26. doi: 10.1002/cbic.201700169. PMID:28444956

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (135 Kb) [Save to disk] Biological Unit Coordinates (5lcl.pdb1.gz) 125 Kb LPC: Ligand-Protein Contacts for 5LCL CSU: Contacts of Structural Units for 5LCL Structure Factors (165 Kb) Retrieve 5LCL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LCL from S2C, [Save to disk] Re-refined 5lcl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LCL in 3D

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Visual 3D analysis of 5LCL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lcl_C] [5lcl_B] [5lcl_A] [5lcl] [5lcl_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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