5LDG Oxidoreductase date Jun 26, 2016
title Isopiperitenone Reductase From Mentha Piperita In Complex Wi Isopiperitenone And Nadp
authors V.Karuppiah, H.S.Toogood, D.Leys, N.S.Scrutton
compound source
Molecule: (-)-Isopiperitenone Reductase
Chain: A
Ec: 1.3.1.82
Engineered: Yes
Organism_scientific: Mentha Piperita
Organism_common: Peppermint
Organism_taxid: 34256
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.120 R_Free 0.146
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.560 65.490 95.109 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand IT9, NAP enzyme Oxidoreductase E.C.1.3.1.82 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePinpointing a Mechanistic Switch Between Ketoreduction and "Ene" Reduction in Short-Chain Dehydrogenases/Reductases., Lygidakis A, Karuppiah V, Hoeven R, Ni Cheallaigh A, Leys D, Gardiner JM, Toogood HS, Scrutton NS, Angew Chem Int Ed Engl. 2016 Aug 8;55(33):9596-600. doi: 10.1002/anie.201603785. , Epub 2016 Jul 13. PMID:27411040
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (5ldg.pdb1.gz) 165 Kb
  • LPC: Ligand-Protein Contacts for 5LDG
  • CSU: Contacts of Structural Units for 5LDG
  • Structure Factors (1870 Kb)
  • Retrieve 5LDG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LDG from S2C, [Save to disk]
  • Re-refined 5ldg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Visual 3D analysis of 5LDG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ldg] [5ldg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LDG
  • Community annotation for 5LDG at PDBWiki (http://pdbwiki.org)

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