5LF8 Hydrolase date Jun 30, 2016
title Human Nucleoside Diphosphate-Linked Moiety X Motif 17 (Nudt1
authors S.Mathea, C.Tallant, E.Salah, D.Wang, S.Velupillai, R.Nowak, S.Oer T.Krojer, N.Burgess-Brown, F.Von Delft, C.H.Arrowsmith, A.M.Edw C.Bountra, K.Huber, Structural Genomics Consortium (Sgc)
compound source
Molecule: Nucleoside Diphosphate-Linked Moiety X Motif 17
Chain: A
Synonym: Nudix Motif 17
Ec: 3.6.1.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nudt17
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: H 3 2
R_factor 0.227 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
151.913 151.913 81.495 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.56 Å
ligand EMC, PO4 enzyme Hydrolase E.C.3.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (5lf8.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 5LF8
  • CSU: Contacts of Structural Units for 5LF8
  • Structure Factors (252 Kb)
  • Retrieve 5LF8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LF8 from S2C, [Save to disk]
    • View 5LF8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LF8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lf8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LF8
  • Community annotation for 5LF8 at PDBWiki (http://pdbwiki.org)

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