5LFN	Cell Adhesion	date	Jul 03, 2016
title	Crystal Structure Of Human Chondroadherin
authors	S.Ramisch, A.Pramhed, D.T.Logan
compound		source
Molecule: Chondroadherin Chain: A, B, C, D Synonym: Cartilage Leucine-Rich Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Chad, Slrr4a Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: 293-Ebna Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcep4
symmetry	Space Group: P 1 21 1	R_factor 0.245 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.480 111.590 128.680 90.00 92.22 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CL	enzyme
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of human chondroadherin: solving a difficult molecular-replacement problem using de novo models., Ramisch S, Pramhed A, Tillgren V, Aspberg A, Logan DT, Acta Crystallogr D Struct Biol. 2017 Jan 1;73(Pt 1):53-63. doi:, 10.1107/S205979831601980X. Epub 2017 Jan 1. PMID:28045385

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (446 Kb) [Save to disk] Biological Unit Coordinates (5lfn.pdb1.gz) 222 Kb Biological Unit Coordinates (5lfn.pdb2.gz) 221 Kb LPC: Ligand-Protein Contacts for 5LFN CSU: Contacts of Structural Units for 5LFN Structure Factors (4734 Kb) Retrieve 5LFN in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LFN from S2C, [Save to disk] Re-refined 5lfn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LFN in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LFN

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lfn_B] [5lfn_A] [5lfn_C] [5lfn_D] [5lfn] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5LFN

Community annotation for 5LFN at PDBWiki (http://pdbwiki.org)

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