5LFY Structural Protein date Jul 05, 2016
title Zinc Bound Dimer Of The Fragment Of Human Amyloid-Beta Pepti Alzheimer'S Disease Pathogenic Taiwanese Mutation D7h
authors V.I.Polshakov, A.B.Mantsyzov, S.A.Kozin
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A, B
Fragment: Unp Residues 17-26
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand NH2, ZN enzyme
Primary referenceA Binuclear Zinc Interaction Fold Discovered in the Homodimer of Alzheimer's Amyloid-beta Fragment with Taiwanese Mutation D7H., Polshakov VI, Mantsyzov AB, Kozin SA, Adzhubei AA, Zhokhov SS, van Beek W, Kulikova AA, Indeykina MI, Mitkevich VA, Makarov AA, Angew Chem Int Ed Engl. 2017 Jun 1. doi: 10.1002/anie.201704615. PMID:28570778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk]
  • Biological Unit Coordinates (5lfy.pdb1.gz) 6 Kb
  • LPC: Ligand-Protein Contacts for 5LFY
  • CSU: Contacts of Structural Units for 5LFY
  • Original NMR restraints for 5LFY from PDB
  • Retrieve 5LFY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LFY from S2C, [Save to disk]
    • View 5LFY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LFY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lfy_A] [5lfy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LFY
  • Community annotation for 5LFY at PDBWiki (http://pdbwiki.org)

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