5LG7 Ligase date Jul 06, 2016
title Solution Nmr Structure Of Tryptophan To Arginine Mutant Of A Ring Domain
authors M.Birkou, C.T.Chasapis, A.K.Loutsidou, D.Bentrop, M.Lelli, T.Herr V.Episkopou, G.A.Spyroulias
compound source
Molecule: E3 Ubiquitin-Protein Ligase Arkadia
Chain: A
Fragment: Ring Domain, Unp Residues 927-994
Synonym: Ring Finger Protein 111
Ec: 6.3.2.-
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rnf111
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-47-1
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceA Residue Specific Insight into the Arkadia E3 Ubiquitin Ligase Activity and Conformational Plasticity., Birkou M, Chasapis CT, Marousis KD, Loutsidou AK, Bentrop D, Lelli M, Herrmann T, Carthy JM, Episkopou V, Spyroulias GA, J Mol Biol. 2017 Jul 21;429(15):2373-2386. doi: 10.1016/j.jmb.2017.06.012. Epub, 2017 Jun 22. PMID:28647409
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (627 Kb) [Save to disk]
  • Biological Unit Coordinates (5lg7.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 5LG7
  • CSU: Contacts of Structural Units for 5LG7
  • Original NMR restraints for 5LG7 from PDB
  • Retrieve 5LG7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LG7 from S2C, [Save to disk]
    • View 5LG7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LG7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lg7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LG7
  • Community annotation for 5LG7 at PDBWiki (http://pdbwiki.org)

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