5LGD	Cell Adhesion	date	Jul 06, 2016
title	The Cidra Domain From Mcvar1 Pfemp1 Bound To Cd36
authors	F.L.Hsieh, M.K.Higgins
compound		source
Molecule: Platelet Glycoprotein 4 Chain: A Synonym: Fatty Acid Translocase,Fat,Glycoprotein Iiib,Gpiii Leukocyte Differentiation Antigen Cd36,Pas Iv,Pas-4,Platele Receptor,Platelet Glycoprotein Iv,Gpiv,Thrombospondin Recep Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd36, Gp3b, Gp4 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
Molecule: Pfemp1 Variant 1 Of Strain Mc Chain: B Engineered: Yes		Organism_scientific: Plasmodium Falciparum Organism_common: Malaria Parasite P. Falciparum Organism_taxid: 5833 Gene: Mcvar-1 Pfemp1 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606
symmetry	Space Group: C 1 2 1	R_factor 0.212 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 129.826 40.726 138.836 90.00 114.85 90.00
method	X-Ray Diffraction	resolution	2.07 Å
ligand	GOL, MAN, NAG, PLM, TRS	enzyme
Gene Ontology	Chain Function Process Component A cellular response to amyloid...

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (205 Kb) [Save to disk] Biological Unit Coordinates (5lgd.pdb1.gz) 198 Kb LPC: Ligand-Protein Contacts for 5LGD CSU: Contacts of Structural Units for 5LGD Structure Factors (1113 Kb) Retrieve 5LGD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LGD from S2C, [Save to disk] Re-refined 5lgd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5LGD

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lgd_A] [5lgd] [5lgd_B] SWISS-PROT database: Domain organization of by SWISSPFAM

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