5LGH	Immune System	date	Jul 07, 2016
title	Afamin Antibody Fragment, N14 Fab, L1- Glycosilated, Crystal Same As 5l7x, But Isomorphous Setting Indexed Same As 5l88,
authors	B.Rupp, A.Naschberger
compound		source
Molecule: Mouse Antibody Fab Fragment, Igg1-Kappa Heavy Cha Chain: H Other_details: Igg1-Kappa Heavy Chain, 1-214		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc
Molecule: Mouse Antibody Fab Fragment, Igg1-Kappa Light Cha Chain: L Other_details: Igg1-Kappa Light Chain, 1-214		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: Balbc
symmetry	Space Group: P 21 21 21	R_factor 0.190 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.196 67.491 88.941 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.86 Å
ligand	1PE, NAG, PEG, PG4	enzyme
Primary reference	The N14 anti-afamin antibody Fab: a rare VL1 CDR glycosylation, crystallographic re-sequencing, molecular plasticity and conservative versus enthusiastic modelling., Naschberger A, Furnrohr BG, Lenac Rovis T, Malic S, Scheffzek K, Dieplinger H, Rupp B, Acta Crystallogr D Struct Biol. 2016 Dec 1;72(Pt 12):1267-1280. Epub 2016 Nov 29. PMID:27917827

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (5lgh.pdb1.gz) 139 Kb LPC: Ligand-Protein Contacts for 5LGH CSU: Contacts of Structural Units for 5LGH Structure Factors (783 Kb) Retrieve 5LGH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LGH from S2C, [Save to disk] Re-refined 5lgh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LGH in 3D

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Visual 3D analysis of 5LGH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lgh] [5lgh_L] [5lgh_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5LGH: [IG_like] [IGv ] by SMART

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