5LHG	Oxidoreductase	date	Jul 11, 2016
title	Structure Of The Kdm1acorest Complex With The Inhibitor 4-M [4-[[4-(1-Methylpiperidin-4-Yl)Oxyphenoxy]Methyl]Phenyl]Thi B]Pyrrole-5-Carboxamide
authors	V.Cecatiello, S.Pasqualato
compound		source
Molecule: Lysine-Specific Histone Demethylase 1a Chain: A Synonym: Braf35-Hdac Complex Protein Bhc110,Flavin-Containi Oxidase Domain-Containing Protein 2; Ec: 1.-.-.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Kdm1a, Aof2, Kdm1, Kiaa0601, Lsd1 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Rest Corepressor 1 Chain: B Synonym: Protein Corest Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rcor1, Kiaa0071, Rcor Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.157 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 120.360 180.580 234.580 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.34 Å
ligand	6X3, FAD, GOL	enzyme	Oxidoreductase E.C.1 BRENDA
Gene Ontology	Chain Function Process Component A negative regulation of DNA b... B
Primary reference	Thieno[3,2-b]pyrrole-5-carboxamides as New Reversible Inhibitors of Histone Lysine Demethylase KDM1A/LSD1. Part 2: Structure-Based Drug Design and Structure-Activity Relationship., Vianello P, Sartori L, Amigoni F, Cappa A, Faga G, Fattori R, Legnaghi E, Ciossani G, Mattevi A, Meroni G, Moretti L, Cecatiello V, Pasqualato S, Romussi A, Thaler F, Trifiro P, Villa M, Botrugno OA, Dessanti P, Minucci S, Vultaggio S, Zagarri E, Varasi M, Mercurio C, J Med Chem. 2017 Feb 27. doi: 10.1021/acs.jmedchem.6b01019. PMID:28186757

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (282 Kb) [Save to disk] Biological Unit Coordinates (5lhg.pdb1.gz) 274 Kb LPC: Ligand-Protein Contacts for 5LHG CSU: Contacts of Structural Units for 5LHG Structure Factors (816 Kb) Retrieve 5LHG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LHG from S2C, [Save to disk] Re-refined 5lhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 5LHG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lhg_B] [5lhg] [5lhg_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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