5LHU Transferase date Jul 12, 2016
title Atp Phosphoribosyltransferase From Mycobacterium Tuberculosi Complex With The Allosteric Inhibitor L-Histidine
authors C.De Chiara, J.P.Pisco, L.P.De Carvalho, S.J.Smerdon, P.A.Walker R.Ogrodowicz
compound source
Molecule: Atp Phosphoribosyltransferase
Chain: A
Synonym: Atp-Prtase
Ec: 2.4.2.17
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis (Strain Atc H37rv);
Organism_taxid: 83332
Strain: Atcc 25618 H37rv
Gene: Hisg, Rv2121c, Mtcy261.17c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Gold Plyss Ag
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pj411
symmetry Space Group: H 3 2
R_factor 0.194 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.012 117.012 127.332 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.02 Å
ligand GOL, HIS, SO4 enzyme Transferase E.C.2.4.2.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUncoupling conformational states from activity in an allosteric enzyme., Pisco JP, Chiara C, Pacholarz KJ, Garza-Garcia A, Ogrodowicz RW, Walker PA, Barran PE, Smerdon SJ, Carvalho LPS, Nat Commun. 2017 Aug 7;8(1):203. doi: 10.1038/s41467-017-00224-0. PMID:28781362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (5lhu.pdb1.gz) 277 Kb
  • LPC: Ligand-Protein Contacts for 5LHU
  • CSU: Contacts of Structural Units for 5LHU
  • Structure Factors (612 Kb)
  • Retrieve 5LHU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LHU from S2C, [Save to disk]
  • Re-refined 5lhu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LHU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LHU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lhu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LHU
  • Community annotation for 5LHU at PDBWiki (http://pdbwiki.org)

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