5LI6 Crystal structure of Mycobacterium tuberculosis CYP126A1 in complex with N-isopropyl-N-((3-(4-methoxyphenyl)-1,2,4-oxadiazol-5-yl)methyl)-2-(4-nitrophenyl)acetamide date
authors Levy, C., Munro, A.W., Leys, D.
compound source
symmetry
R_factor
R_Free 0.24174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 6XF, HEM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Characterization and Ligand/Inhibitor Identification Provide Functional Insights into the Mycobacterium tuberculosis Cytochrome P450 CYP126A1., Chenge JT, Duyet LV, Swami S, McLean KJ, Kavanagh ME, Coyne AG, Rigby SE, Cheesman MR, Girvan HM, Levy CW, Rupp B, von Kries JP, Abell C, Leys D, Munro AW, J Biol Chem. 2017 Jan 27;292(4):1310-1329. doi: 10.1074/jbc.M116.748822. Epub, 2016 Dec 8. PMID:27932461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (5li6.pdb1.gz) 141 Kb
  • LPC: Ligand-Protein Contacts for 5LI6
  • CSU: Contacts of Structural Units for 5LI6
  • Structure Factors (1492 Kb)
  • Retrieve 5LI6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LI6 from S2C, [Save to disk]
  • Re-refined 5li6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LI6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LI6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5li6] [5li6_A] [5li6_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LI6
  • Community annotation for 5LI6 at PDBWiki (http://pdbwiki.org)

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