OCA Atlas for 5LIA

5LIA

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

6XN, BMA, CA, EDO, K, MAN, NA, NAG, SO4, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A	phosphodiesterase I activity... scavenger receptor activity

Primary reference

Discovery of potent inhibitors of the lysophospholipase autotaxin., Shah P, Cheasty A, Foxton C, Raynham T, Farooq M, Gutierrez IF, Lejeune A, Pritchard M, Turnbull A, Pang L, Owen P, Boyd S, Stowell A, Jordan A, Hamilton NM, Hitchin JR, Stockley M, MacDonald E, Quesada MJ, Trivier E, Skeete J, Ovaa H, Moolenaar WH, Ryder H, Bioorg Med Chem Lett. 2016 Oct 14. pii: S0960-894X(16)31064-2. doi:, 10.1016/j.bmcl.2016.10.036. PMID:27780639

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]

Biological Unit Coordinates (5lia.pdb1.gz) 271 Kb

LPC: Ligand-Protein Contacts for 5LIA

CSU: Contacts of Structural Units for 5LIA

Structure Factors (4495 Kb)

Retrieve 5LIA in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5LIA from S2C, [Save to disk]

Re-refined 5lia structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LIA in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lia] [5lia_A]

SWISS-PROT database:

Domains found in 5LIA: [Endonuclease_NS] [NUC] [SO ] by SMART

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