5LJ3 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GTP, MG, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • metallopeptidase activity


    • C


    D


    F


    G

  • U2-type catalytic step 2 spl...
    • H


    J


    K

  • U2-type catalytic step 1 spl...
  • U2-type catalytic step 2 spl...
    • L


    M

  • U2-type catalytic step 1 spl...
  • U2-type catalytic step 2 spl...
    • N


    O

  • U2-type catalytic step 1 spl...
    • P


    R


    S

  • U2-type catalytic step 1 spl...
  • U2-type catalytic step 2 spl...
    • T

  • U2-type catalytic step 1 spl...
  • U2-type catalytic step 2 spl...
    • W


    Y


    b, k


    d, n


    j, m


    l, h


    p, e


    q, f


    r, g


    Primary referenceCryo-EM structure of the spliceosome immediately after branching., Galej WP, Wilkinson ME, Fica SM, Oubridge C, Newman AJ, Nagai K, Nature. 2016 Jul 26. doi: 10.1038/nature19316. PMID:27459055
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1302 Kb) [Save to disk]
  • Biological Unit Coordinates (5lj3.pdb1.gz) 1267 Kb
  • LPC: Ligand-Protein Contacts for 5LJ3
  • CSU: Contacts of Structural Units for 5LJ3
  • Retrieve 5LJ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LJ3 from S2C, [Save to disk]
    • View 5LJ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lj3] [5lj3_e] [5lj3_f] [5lj3_g] [5lj3_h] [5lj3_j] [5lj3_k] [5lj3_l] [5lj3_m] [5lj3_n] [5lj3_p] [5lj3_q] [5lj3_r] [5lj3_x] [5lj3_A] [5lj3_C] [5lj3_D] [5lj3_E] [5lj3_F] [5lj3_G] [5lj3_H] [5lj3_I] [5lj3_J] [5lj3_K] [5lj3_L] [5lj3_M] [5lj3_N] [5lj3_O] [5lj3_P] [5lj3_R] [5lj3_S] [5lj3_T] [5lj3_U] [5lj3_V] [5lj3_W] [5lj3_Y] [5lj3_Z] [5lj3_b] [5lj3_d]
  • SWISS-PROT database:
  • Domains found in 5LJ3: [Cir_N] [EFG_C] [EFG_IV] [HAT] [JAB_MPN] [LRRcap] [MA3] [MIF4G] [RRM] [SANT] [Sm] [WD40] [cwf21 ] by SMART

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