5LJC Retinol-Binding Protein date Jul 18, 2016
title Crystal Structure Of Holo Human Crbp1
authors G.Zanotti, F.Vallese, R.Berni, I.Menozzi
compound source
Molecule: Retinol-Binding Protein 1
Chain: A
Synonym: Cellular Retinol-Binding Protein,Crbp,Cellular Ret Binding Protein I,Crbp-I;
Engineered: Yes
Other_details: Position 108 Was Mutated In Leu. Q108l
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbp1, Crbp1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.179 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.035 48.563 75.748 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.43 Å
ligand NA, RTL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and molecular determinants affecting the interaction of retinol with human CRBP1., Menozzi I, Vallese F, Polverini E, Folli C, Berni R, Zanotti G, J Struct Biol. 2017 Jan 3. pii: S1047-8477(16)30267-2. doi:, 10.1016/j.jsb.2016.12.012. PMID:28057518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5ljc.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5LJC
  • CSU: Contacts of Structural Units for 5LJC
  • Structure Factors (603 Kb)
  • Retrieve 5LJC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LJC from S2C, [Save to disk]
  • Re-refined 5ljc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LJC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LJC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ljc] [5ljc_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LJC
  • Community annotation for 5LJC at PDBWiki (http://pdbwiki.org)

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