5LJI Oxidoreductase date Jul 18, 2016
title Streptococcus Pneumonia Tigr4 Flavodoxin: Structural And Bio Characterization Of A Novel Drug Target
authors A.Rodriguez-Cardenas, A.L.Rojas, A.Velazquez-Campoy, R.Hurtado- J.Sancho
compound source
Molecule: Flavodoxin
Chain: A, C
Engineered: Yes
 Organism_scientific: Streptococcus Pneumoniae
Organism_taxid: 1313
Gene: Aww74_08705
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: H 3
R_factor 0.187 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.676 101.676 68.285 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.07 Å
ligand CA, FMN, MSE enzyme
Gene AWW74
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • electron transfer activity


    • Primary referenceStreptococcus pneumoniae TIGR4 Flavodoxin: Structural and Biophysical Characterization of a Novel Drug Target., Rodriguez-Cardenas A, Rojas AL, Conde-Gimenez M, Velazquez-Campoy A, Hurtado-Guerrero R, Sancho J, PLoS One. 2016 Sep 20;11(9):e0161020. doi: 10.1371/journal.pone.0161020., eCollection 2016. PMID:27649488
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (5lji.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (5lji.pdb2.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 5LJI
  • CSU: Contacts of Structural Units for 5LJI
  • Structure Factors (1104 Kb)
  • Retrieve 5LJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LJI from S2C, [Save to disk]
  • Re-refined 5lji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LJI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lji] [5lji_C] [5lji_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LJI
  • Community annotation for 5LJI at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science