5LJL Oxidoreductase date Jul 18, 2016
title Streptococcus Pneumonia Tigr4 Flavodoxin: Structural And Bio Characterization Of A Novel Drug Target
authors A.Rodriguez-Cardenas, A.L.Rojas, A.Velazquez-Campoy, R.Hurtado- J.Sancho
compound source
Molecule: Flavodoxin
Chain: A
Engineered: Yes
 Organism_scientific: Streptococcus Pneumoniae Serotype 4 (S Atcc Baa-334 Tigr4);
Organism_taxid: 170187
Gene: Fld, Sp_1297
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
29.871 60.707 61.803 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand PO4 enzyme
Gene SP
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceStreptococcus pneumoniae TIGR4 Flavodoxin: Structural and Biophysical Characterization of a Novel Drug Target., Rodriguez-Cardenas A, Rojas AL, Conde-Gimenez M, Velazquez-Campoy A, Hurtado-Guerrero R, Sancho J, PLoS One. 2016 Sep 20;11(9):e0161020. doi: 10.1371/journal.pone.0161020., eCollection 2016. PMID:27649488
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (5ljl.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 5LJL
  • CSU: Contacts of Structural Units for 5LJL
  • Structure Factors (329 Kb)
  • Retrieve 5LJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LJL from S2C, [Save to disk]
  • Re-refined 5ljl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LJL in 3D
  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 5LJL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ljl_A] [5ljl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LJL
  • Community annotation for 5LJL at PDBWiki (http://pdbwiki.org)

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