5LJM	Cell Cycle	date	Jul 18, 2016
title	Structure Of Spata2 Pub Domain
authors	P.R.Elliott, D.Komander
compound		source
Molecule: Spermatogenesis-Associated Protein 2 Chain: A Synonym: Spermatogenesis-Associated Protein Pd1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Spata2, Kiaa0757, Pd1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: Rosetta II Expression_system_vector_type: Plasmid Expression_system_plasmid: Popink
symmetry	Space Group: P 1 21 1	R_factor 0.182 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 43.480 51.140 56.290 90.00 105.97 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	GOL	enzyme
Primary reference	SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC Signaling., Elliott PR, Leske D, Hrdinka M, Bagola K, Fiil BK, McLaughlin SH, Wagstaff J, Volkmar N, Christianson JC, Kessler BM, Freund SM, Komander D, Gyrd-Hansen M, Mol Cell. 2016 Aug 27. pii: S1097-2765(16)30415-4. doi:, 10.1016/j.molcel.2016.08.001. PMID:27591049

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk] Biological Unit Coordinates (5ljm.pdb1.gz) 77 Kb LPC: Ligand-Protein Contacts for 5LJM CSU: Contacts of Structural Units for 5LJM Structure Factors (2469 Kb) Retrieve 5LJM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LJM from S2C, [Save to disk] Re-refined 5ljm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LJM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LJM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ljm_A] [5ljm] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5LJM

Community annotation for 5LJM at PDBWiki (http://pdbwiki.org)

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