5LKD Transferase date Jul 22, 2016
title Crystal Structure Of The Xi Glutathione Transferase Ecm4 Fro Saccharomyces Cerevisiae In Complex With Glutathione
authors M.Schwartz, C.Didierjean, A.Hecker, J.M.Girardet, M.Morel-Rouhie E.Gelhaye, F.Favier
compound source
Molecule: Glutathione S-Transferase Omega-Like 2
Chain: A, B
Synonym: Extracellular Mutant Protein 4,Glutathione-Depende Dehydroascorbate Reductase;
Ec: 2.5.1.18,1.8.5.1
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Gene: Ecm4, Gto2, Ykr076w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.159 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.440 82.440 80.580 90.00 95.31 90.00
method X-Ray Diffractionresolution 1.68 Å
ligand GSH enzyme Transferase E.C.2.5.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • glutathione dehydrogenase (a...


    • Primary referenceCrystal Structure of Saccharomyces cerevisiae ECM4, a Xi-Class Glutathione Transferase that Reacts with Glutathionyl-(hydro)quinones., Schwartz M, Didierjean C, Hecker A, Girardet JM, Morel-Rouhier M, Gelhaye E, Favier F, PLoS One. 2016 Oct 13;11(10):e0164678. doi: 10.1371/journal.pone.0164678., eCollection 2016. PMID:27736955
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (234 Kb) [Save to disk]
  • Biological Unit Coordinates (5lkd.pdb1.gz) 228 Kb
  • LPC: Ligand-Protein Contacts for 5LKD
  • CSU: Contacts of Structural Units for 5LKD
  • Structure Factors (693 Kb)
  • Retrieve 5LKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LKD from S2C, [Save to disk]
  • Re-refined 5lkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LKD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lkd_A] [5lkd_B] [5lkd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LKD
  • Community annotation for 5LKD at PDBWiki (http://pdbwiki.org)

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