5LKW Membrane Protein date Jul 25, 2016
title Crystal Structure Of The Peptidoglycan-Associated Lipoprotei From Burkholderia Cepacia In Complex With Dap
authors M.Romano, A.Ruggiero, R.Berisio
compound source
Molecule: Putative Ompa Family Lipoprotein
Chain: A, B
Engineered: Yes
 Organism_scientific: Burkholderia Cenocepacia (Strain Atcc Dsm 16553 Lmg 16656 Nctc 13227 J2315 Cf5610);
Organism_taxid: 216591
Strain: Atcc Baa-245 Dsm 16553 Lmg 16656 Nctc 13227 Cf5610;
Gene: Bcal3204
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 32
R_factor 0.188 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.706 77.706 38.606 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand API enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe Burkholderia cenocepacia peptidoglycan-associated lipoprotein is involved in epithelial cell attachment and elicitation of inflammation., Dennehy R, Romano M, Ruggiero A, Mohamed YF, Dignam SL, Mujica Troncoso C, Callaghan M, Valvano MA, Berisio R, McClean S, Cell Microbiol. 2017 May;19(5). doi: 10.1111/cmi.12691. Epub 2016 Nov 25. PMID:27886433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (5lkw.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (5lkw.pdb2.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 5LKW
  • CSU: Contacts of Structural Units for 5LKW
  • Structure Factors (358 Kb)
  • Retrieve 5LKW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LKW from S2C, [Save to disk]
    • View 5LKW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LKW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lkw_B] [5lkw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LKW
  • Community annotation for 5LKW at PDBWiki (http://pdbwiki.org)

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