5LM1	Hydrolase	date	Jul 28, 2016
title	Crystal Structure Of Hd-Ptp Phosphatase In Complex With Ubap
authors	C.Levy
compound		source
Molecule: Tyrosine-Protein Phosphatase Non-Receptor Type 23 Chain: A Synonym: His Domain-Containing Protein Tyrosine Phosphatase Protein Tyrosine Phosphatase Td14,Ptp-Td14; Ec: 3.1.3.48 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ptpn23, Kiaa1471 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_plasmid: Pet21a
Molecule: Ubap-1 Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606
symmetry	Space Group: P 21 21 21	R_factor 0.213 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.930 93.270 102.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.55 Å
ligand		enzyme	Hydrolase E.C.3.1.3.48 BRENDA
Primary reference	Structural Basis for Selective Interaction between the ESCRT Regulator HD-PTP and UBAP1., Gahloth D, Levy C, Heaven G, Stefani F, Wunderley L, Mould P, Cliff MJ, Bella J, Fielding AJ, Woodman P, Tabernero L, Structure. 2016 Dec 6;24(12):2115-2126. doi: 10.1016/j.str.2016.10.006. Epub 2016, Nov 10. PMID:27839950

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (5lm1.pdb1.gz) 57 Kb CSU: Contacts of Structural Units for 5LM1 Structure Factors (189 Kb) Retrieve 5LM1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LM1 from S2C, [Save to disk] Re-refined 5lm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LM1 in 3D

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Visual 3D analysis of 5LM1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lm1_A] [5lm1_B] [5lm1] SWISS-PROT database: Domain organization of by SWISSPFAM

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