5LQF Transferase date Aug 17, 2016
title Cdk1cyclinb1cks2 In Complex With Nu6102
authors C.R.Coxon, E.Anscombe, S.J.Harnor, M.P.Martin, B.J.Carbain, I.R.Hardcastle, L.K.Harlow, S.Korolchuk, C.J.Matheson, M.E.Nobl D.R.Newell, D.M.Turner, M.Sivaprakasam, L.Z.Wang, C.Wong, B.T.Go R.J.Griffin, J.A.Endicott, C.Cano
compound source
Molecule: Cyclin-Dependent Kinase 1
Chain: A, D
Synonym: Cdk1,Cell Division Control Protein 2 Homolog,Cell Protein Kinase 1,P34 Protein Kinase;
Ec: 2.7.11.22,2.7.11.23
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk1, Cdc2, Cdc28a, Cdkn1, P34cdc2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: G2mitotic-Specific Cyclin-B1
Chain: B, E
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ccnb1, Ccnb
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Cyclin-Dependent Kinases Regulatory Subunit 2
Chain: C, F
Synonym: Cks-2
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cks2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.198 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.040 67.750 85.060 103.88 90.89 90.42
method X-Ray Diffractionresolution 2.06 Å
ligand 4SP enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D
  • virus receptor activity
  • histone kinase activity


  • E, B


    F, C


    Primary referenceCyclin-Dependent Kinase (CDK) Inhibitors; Structure-Activity Relationships and Insights into the CDK-2 Selectivity of 6-Substituted 2-Arylaminopurines., Coxon CR, Anscombe E, Harnor SJ, Martin MP, Carbain BJ, Golding BT, Hardcastle IR, Harlow LK, Korolchuk S, Matheson CJ, Newell DR, Noble ME, Sivaprakasam M, Tudhope SJ, Turner DM, Wang LZ, Wedge SR, Wong C, Griffin RJ, Endicott JA, Cano C, J Med Chem. 2016 Dec 22. doi: 10.1021/acs.jmedchem.6b01254. PMID:28005359
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (445 Kb) [Save to disk]
  • Biological Unit Coordinates (5lqf.pdb1.gz) 221 Kb
  • Biological Unit Coordinates (5lqf.pdb2.gz) 220 Kb
  • LPC: Ligand-Protein Contacts for 5LQF
  • CSU: Contacts of Structural Units for 5LQF
  • Structure Factors (579 Kb)
  • Retrieve 5LQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LQF from S2C, [Save to disk]
  • Re-refined 5lqf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LQF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lqf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lqf_B] [5lqf] [5lqf_A] [5lqf_D] [5lqf_E] [5lqf_C] [5lqf_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LQF
  • Community annotation for 5LQF at PDBWiki (http://pdbwiki.org)

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