5LRK Hydrolase date Aug 19, 2016
title Crystal Structure Of The Porcine Carboxypeptidase B - Anabae Complex
authors H.Schreuder, A.Liesum, P.Loenze
compound source
Molecule: Carboxypeptidase B
Chain: A, B, C
Fragment: Unp Residues 111-416
Ec: 3.4.17.2
 Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823

Molecule: Anabaenopeptin F
Chain: F, G, H
Organism_scientific: Planktothrix Rubescens
Organism_taxid: 59512
Strain: Cbt287
symmetry Space Group: P 32
R_factor 0.154 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.620 124.620 48.470 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand 73N, 73O, DLY, IIL, MAA, ZN enzyme Hydrolase E.C.3.4.17.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk]
  • Biological Unit Coordinates (5lrk.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (5lrk.pdb2.gz) 59 Kb
  • Biological Unit Coordinates (5lrk.pdb3.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 5LRK
  • CSU: Contacts of Structural Units for 5LRK
  • Structure Factors (315 Kb)
  • Retrieve 5LRK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LRK from S2C, [Save to disk]
  • Re-refined 5lrk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LRK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LRK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lrk_B] [5lrk_G] [5lrk_F] [5lrk_H] [5lrk_C] [5lrk] [5lrk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LRK: [Zn_pept ] by SMART
    • Other resources with information on 5LRK
  • Community annotation for 5LRK at PDBWiki (http://pdbwiki.org)

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