5LSI Cell Cycle date Sep 02, 2016
title Crystal Structure Of The Kinetochore Mis12 Complex Head2 Sub Containing Dsn1 And Nsl1 Fragments
authors I.R.Vetter, A.Petrovic, J.Keller, Y.Liu
compound source
Molecule: Kinetochore-Associated Protein Dsn1 Homolog
Chain: D
Fragment: Head2 Domain, Unp Residues 68-200
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dsn1, C20orf172, Mis13
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codon-Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2rbs

Molecule: Kinetochore-Associated Protein Nsl1 Homolog
Chain: E
Fragment: Unp Residues 29-99
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nsl1, C1orf48, Dc31, Dc8, Mis14
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Codon-Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2rbs
symmetry Space Group: P 32 2 1
R_factor 0.216 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.640 59.640 82.340 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
D


E


Primary referenceStructure of the MIS12 Complex and Molecular Basis of Its Interaction with CENP-C at Human Kinetochores., Petrovic A, Keller J, Liu Y, Overlack K, John J, Dimitrova YN, Jenni S, van Gerwen S, Stege P, Wohlgemuth S, Rombaut P, Herzog F, Harrison SC, Vetter IR, Musacchio A, Cell. 2016 Nov 3;167(4):1028-1040.e15. doi: 10.1016/j.cell.2016.10.005. Epub 2016, Oct 27. PMID:27881301
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (5lsi.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 5LSI
  • CSU: Contacts of Structural Units for 5LSI
  • Structure Factors (198 Kb)
  • Retrieve 5LSI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LSI from S2C, [Save to disk]
  • Re-refined 5lsi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5LSI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5LSI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5lsi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lsi] [5lsi_D] [5lsi_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5LSI
  • Community annotation for 5LSI at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science