5LSU	Transferase	date	Sep 05, 2016
title	Structure Of The Epigenetic Oncogene Mmset And Inhibition By Sinefungin Derivatives
authors	D.Tisi, P.Pathuri, T.Heightman
compound		source
Molecule: Histone-Lysine N-Methyltransferase Nsd2 Chain: A, B Synonym: Multiple Myeloma Set Domain-Containing Protein,Mms Set Domain-Containing Protein 2,Nsd2,Protein Trithorax-5,Wo Hirschhorn Syndrome Candidate 1 Protein,Whsc1; Ec: 2.1.1.43 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Whsc1, Kiaa1090, Mmset, Nsd2, Trx5 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)
symmetry	Space Group: P 21 21 21	R_factor 0.171 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.583 63.114 81.094 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.14 Å
ligand	SAM, ZN	enzyme	Transferase E.C.2.1.1.43 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives., Tisi D, Chiarparin E, Tamanini E, Pathuri P, Coyle JE, Hold A, Holding FP, Amin N, Martin AC, Rich SJ, Berdini V, Yon J, Acklam P, Burke R, Drouin L, Harmer JE, Jeganathan F, van Montfort RL, Newbatt Y, Tortorici M, Westlake M, Wood A, Hoelder S, Heightman TD, ACS Chem Biol. 2016 Sep 27. PMID:27571355

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (168 Kb) [Save to disk] Biological Unit Coordinates (5lsu.pdb1.gz) 84 Kb Biological Unit Coordinates (5lsu.pdb2.gz) 81 Kb LPC: Ligand-Protein Contacts for 5LSU CSU: Contacts of Structural Units for 5LSU Structure Factors (599 Kb) Retrieve 5LSU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LSU from S2C, [Save to disk] Re-refined 5lsu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LSU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5LSU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lsu_B] [5lsu] [5lsu_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5LSU: [AWS] [EGF_like] [PostSET] [SET ] by SMART

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