5LUD Isomerase date Sep 08, 2016
title Structure Of Cyclophilin A In Complex With 2,3-Diaminopyridi
authors I.W.Mcnae, M.W.Nowicki, E.A.Blackburn, M.A.Wear, M.D.Walkinshaw
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A
Synonym: Ppiase
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hel-S-69p
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.193 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.535 54.477 86.808 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand 76X enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (5lud.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 5LUD
  • CSU: Contacts of Structural Units for 5LUD
  • Structure Factors (1185 Kb)
  • Retrieve 5LUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LUD from S2C, [Save to disk]
  • Re-refined 5lud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LUD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lud_A] [5lud]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LUD
  • Community annotation for 5LUD at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science