5LUX | Transcription | date | Sep 12, 2016 |
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title | Homeobox Transcription Factor Cdx1 Bound To Methylated Dna | ||||||||||||||
authors | E.Morgunova, A.Popov, J.Taipale | ||||||||||||||
compound | source | ||||||||||||||
Molecule: Dna (5'-D(Ptptpgptpgptptptptpap(5cm) Pgpapcpcptpc)-3'); Chain: A Engineered: Yes |
Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 | ||||||||||||||
Molecule: Homeobox Protein Cdx-1 Chain: K, L Synonym: Caudal-Type Homeobox Protein 1 Engineered: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdx1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_variant: Rosetta Expression_system_vector_type: Plasmid Expression_system_plasmid: Petg20a | ||||||||||||||
Molecule: Dna (5'-D(Ptptpgptpgptptptptpap(5cm) Pgpapcpcptpcpc)-3'); Chain: B Engineered: Yes |
Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 | ||||||||||||||
Molecule: Dna (5'-D(Pgpapgpgptp(5cm) Pgptpapapapapcpapcpapa)-3'); Chain: F Engineered: Yes |
Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 | ||||||||||||||
Molecule: Dna (5'-D(Pgpgpapgpgptp(5cm) Pgptpapapapapcpapcpapa)-3'); Chain: E Engineered: Yes |
Synthetic: Yes Organism_scientific: Homo Sapiens Organism_taxid: 9606 | ||||||||||||||
symmetry | Space Group: I 1 2 1 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 3.23 Å | ||||||||||||
ligand | 5CM | enzyme |
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Gene Ontology |
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Primary reference | Impact of cytosine methylation on DNA binding specificities of human transcription factors., Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schubeler D, Vinson C, Taipale J, Science. 2017 May 5;356(6337). pii: eaaj2239. doi: 10.1126/science.aaj2239. PMID:28473536 |
Data retrieval |
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Visual 3D analysis of 5LUX |
Structure-derived information |
Sequence-derived information |
Other resources with information on 5LUX |
OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |