5LVO	Transferase	date	Sep 14, 2016
title	Human Pdk1 Kinase Domain In Complex With Allosteric Compound Bound To The Pif-Pocket
authors	J.O.Schulze, G.Saladino, K.Busschots, S.Neimanis, E.Suess, D.Odad S.Zeuzem, V.Hindie, A.K.Herbrand, M.N.Lisa, P.M.Alzari, F.L.Gerv R.M.Biondi
compound		source
Molecule: 3-Phosphoinositide-Dependent Protein Kinase 1 Chain: A Synonym: Hpdk1 Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdpk1, Pdk1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
symmetry	Space Group: C 1 2 1	R_factor 0.135 R_Free 0.157
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.220 44.420 47.870 90.00 101.81 90.00
method	X-Ray Diffraction	resolution	1.09 Å
ligand	78W, ATP, CL, DMS, DTD, SEP	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Bidirectional Allosteric Communication between the ATP-Binding Site and the Regulatory PIF Pocket in PDK1 Protein Kinase., Schulze JO, Saladino G, Busschots K, Neimanis S, Suss E, Odadzic D, Zeuzem S, Hindie V, Herbrand AK, Lisa MN, Alzari PM, Gervasio FL, Biondi RM, Cell Chem Biol. 2016 Sep 28. pii: S2451-9456(16)30302-6. doi:, 10.1016/j.chembiol.2016.06.017. PMID:27693059

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk] Biological Unit Coordinates (5lvo.pdb1.gz) 151 Kb LPC: Ligand-Protein Contacts for 5LVO CSU: Contacts of Structural Units for 5LVO Structure Factors (2152 Kb) Retrieve 5LVO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5LVO from S2C, [Save to disk] Re-refined 5lvo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5LVO in 3D

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Visual 3D analysis of 5LVO

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5lvo_A] [5lvo] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5LVO: [S_TKc ] by SMART

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