5LWV Transferase date Sep 19, 2016
title Human Ogt In Complex With Udp And Fused Substrate Peptide (H
authors O.Raimi, K.Rafie, V.Kapuria, W.Herr, D.Van Aalten
compound source
Molecule: Host Cell Factor 1,Udp-N-Acetylglucosamine--Pepti Acetylglucosaminyltransferase 110 Kda Subunit;
Chain: A
Synonym: Hcf-1,C1 Factor,Cff,Vcaf,Vp16 Accessory Protein,O- Transferase Subunit P110,O-Linked N-Acetylglucosamine Trans Kda Subunit,Ogt;
Ec: 2.4.1.255
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hcfc1, Hcf1, Hfc1, Ogt
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector_type: Plasmid, Plasmid
symmetry Space Group: P 62 2 2
R_factor 0.169 R_Free 0.199
crystal
cell
length a length b length c angle alpha angle beta angle gamma
168.024 168.024 162.265 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand GOL, PO4, UDP enzyme Transferase E.C.2.4.1.255 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (5lwv.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 5LWV
  • CSU: Contacts of Structural Units for 5LWV
  • Structure Factors (2122 Kb)
  • Retrieve 5LWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LWV from S2C, [Save to disk]
  • Re-refined 5lwv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LWV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lwv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5LWV
  • Community annotation for 5LWV at PDBWiki (http://pdbwiki.org)

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