5LXD Transferase date Sep 20, 2016
title Crystal Structure Of Dyrk2 In Complex With Eht 1610 (Compoun
authors A.Chaikuad, F.Von Delft, C.H.Arrowsmith, A.Edwards, C.Bountra, T. S.Knapp, Structural Genomics Consortium (Sgc)
compound source
Molecule: Dual Specificity Tyrosine-Phosphorylation-Regulat 2;
Chain: A, B
Ec: 2.7.12.1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dyrk2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: C 1 2 1
R_factor 0.197 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.240 130.000 136.330 90.00 90.40 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand 7A7, EDO, PTR enzyme Transferase E.C.2.7.12.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (280 Kb) [Save to disk]
  • Biological Unit Coordinates (5lxd.pdb1.gz) 137 Kb
  • Biological Unit Coordinates (5lxd.pdb2.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 5LXD
  • CSU: Contacts of Structural Units for 5LXD
  • Structure Factors (3116 Kb)
  • Retrieve 5LXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5LXD from S2C, [Save to disk]
  • Re-refined 5lxd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5LXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5LXD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5lxd_A] [5lxd_B] [5lxd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5LXD: [S_TKc ] by SMART
    • Other resources with information on 5LXD
  • Community annotation for 5LXD at PDBWiki (http://pdbwiki.org)

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